Rocky, how far forward of "stock" is your engine, and why did you move it so far forward? It sounds like you could have left it a little further back to avoid some of the interference.
When I first set one of these up in a tri5 I put the stock bellhousing and mounts on the LS engine and dropped it into my Nomad which still had the bellhousing frame horns on it. I found I had to space the mounts 2 1/4" forward to clear the firewall. This is where it sat.
Then I designed my LS mounts to put it in the same place on my C4 conversion frames. And this is where it sat in a 57 I built a frame for. It's about as far back as you can go without cutting the firewall: